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SimLab Science
Courses

Structured, cohort-based scientific training

Every SimLab Academy course pairs lectures and reading with live cloud laboratories and real assessment.

Molecular DynamicsFull

Introduction to Molecular Dynamics with GROMACS and CHARMM-GUI

Learn to run real molecular simulations, from a raw PDB file to a published-quality analysis.

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Molecular DynamicsNot currently accepting applications

Trajectory Analysis & Scientific Python

Turn raw MD trajectories into real scientific results with MDAnalysis, NumPy, and Matplotlib.

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Molecular DynamicsNot currently accepting applications

Enhanced Sampling I: Free Energy Methods

Go beyond a single trajectory - compute real free energy profiles with umbrella sampling, WHAM, and replica exchange.

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Molecular DynamicsNot currently accepting applications

Molecular Dynamics of Membrane Proteins

Build, equilibrate, and analyze a real lipid bilayer system with CHARMM-GUI Membrane Builder.

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Molecular DynamicsNot currently accepting applications

Enhanced Sampling II: Metadynamics

Map full free energy landscapes with well-tempered metadynamics and PLUMED.

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Molecular DynamicsIn progress

Membrane Protein Masterclass

Independent project: build a membrane-embedded system

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Molecular DynamicsIn progress

Hands-On MD Simulation

Independent project: build, run, and analyze a real 2 ns MD simulation

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More tracks are coming

SimLab Academy is expanding beyond molecular dynamics into:

Computational ChemistryBioinformaticsStructural BiologyArtificial Intelligence in BiologyHigh-Performance Computing